In [19]:

# import important modules
import pandas as pd
matrix_gene = pd.read_csv("../Data/Comparisons/Matrisome_Hs_MasterList.csv") # MOCSvsMOSE
#matrix_gene

In [20]:

matrix_index = ["COL11A1","COMP","FN1","VCAN","CTSB","COL1A1","AGT","ANXA5","ANXA6",
            "LAMB1","FBLN2","LAMC1","LGALS3","CTSG",
            "HSPG2","ANXA1","LAMA4","COL6A6","VWF",
            "ABI3B","PTNXB","COL15A1"] # matrix index gene list

len(matrix_index)

Out[20]:

22

In [ ]:

In [21]:

# the rows that only contains the matrix index genes
matrix_gene_final=matrix_gene[matrix_gene['Gene.symbol'].isin
            (["COL11A1","COMP","FN1","VCAN","CTSB","COL1A1","AGT","ANXA5","ANXA6",
            "LAMB1","FBLN2","LAMC1","LGALS3","CTSG",
            "HSPG2","ANXA1","LAMA4","COL6A6","VWF",
            "ABI3B","PTNXB","COL15A1"])]
matrix_gene_final = matrix_gene_final.drop(matrix_gene_final.columns[[0]], axis=1)  # delete first column
matrix_gene_final.to_csv(r'../Python/ECM22genes.csv') # export as csv
matrix_gene_final
#len(matrix_gene_final)

# The genes that are not in the matrisome:
#ABI3B
#PTNXB

Out[21]:

	Category	Gene.symbol
15	ECM Glycoproteins	COMP
43	ECM Glycoproteins	FBLN2
54	ECM Glycoproteins	FN1
79	ECM Glycoproteins	LAMA4
81	ECM Glycoproteins	LAMB1
85	ECM Glycoproteins	LAMC1
186	ECM Glycoproteins	VWF
196	Collagens	COL11A1
201	Collagens	COL15A1
206	Collagens	COL1A1
232	Collagens	COL6A6
253	Proteoglycans	HSPG2
273	Proteoglycans	VCAN
274	ECM-affiliated Proteins	ANXA1
281	ECM-affiliated Proteins	ANXA5
282	ECM-affiliated Proteins	ANXA6
366	ECM-affiliated Proteins	LGALS3
492	ECM Regulators	AGT
520	ECM Regulators	CTSB
525	ECM Regulators	CTSG

-->

Hello everyone, from the 11th of May, I will regularly be posting about the latest about technology and other material.

see ya soon!

Ishack

After Many Years Im Back!

Hello all,

The Techresolver Blog is back, in the next few months I will be posting more tech updates and news.

Books on Unity3D

1.Unity Game Development Essentials

In Detail

Game engines are central to the video games we know and love. From the artwork to the mathematics that underpin the frames onscreen, the engine calls the shots. Aside from offering one of the leading 3D game engines, Unity also provides a superlative development tool - a tool that can produce professional standard games for Mac, PC, and the Unity Web Player.
This book is a complete exercise in game development covering environments, physics, sound, particles, and much more, to get you up and working with Unity quickly.
Taking a practical approach, this book will introduce you to the concepts of developing 3D games before getting to grips with development in Unity itself. From creating 3D worlds to scripting and creating simple game elements you will learn everything you'll need to get started with game development for the PC, Mac, and Web.

Product Details

• Paperback: 316 pages
• Publisher: Packt Publishing; 1 edition (October 1, 2009)
• Language: English
• ISBN-10: 184719818X
• ISBN-13: 978-1847198181
• Product Dimensions: 9.1 x 7.4 x 0.9 inches

2.Creating 3D Game Art for the iPhone with Unity: Featuring modo and Blender pipelines

Revolutionize your iPhone and iPad game development with Unity iOS, a fully integrated professional application and powerful game engine, which is quickly becoming the best solution for creating visually stunning games for Apple's iDevices easier, and more fun for artists.  From concept to completion you'll learn to create and animate using modo and Blender as well as creating a full level utilizing the powerful toolset in Unity iOS as it specifically relates to iPhone and iPad game development.

Product Details

• Paperback: 272 pages
• Publisher: Focal Press; 1 edition (October 26, 2010)
• Language: English
• ISBN-10: 0240815637
• ISBN-13: 978-0240815633
• Product Dimensions: 9.6 x 7.4 x 0.8 inches

3.Unity 3D Game Development by Example Beginner's Guide

he book takes a clear, step-by-step approach to building small, simple game projects. It focuses on short, attainable goals so that the reader can finish something, instead of trying to create a complex RPG or open-world game that never sees the light of day. This book encourages readers hungry for knowledge. It does not go into gory detail about how every little knob and dial functions - that's what the software manual is for! Rather, this book is the fastest path from zero to finished game using the Unity 3D engine. If you've ever wanted to develop games, but have never felt "smart" enough to deal with complex programming, this book is for you. It's also a great kick-start for developers coming from other tools like Flash, Unreal Engine, and Game Maker Pro.

Product Details

• Paperback: 384 pages
• Publisher: Packt Publishing (September 24, 2010)
• Language: English
• ISBN-10: 1849690545
• ISBN-13: 978-1849690546
• Product Dimensions: 9.2 x 7.4 x 1 inches

Source:Amazon.com

Enjoy